Arabidopsis
- The Arabidopsis Information Resource (TAIR) (A database of genetic and molecular molecular biology data for the model higher plant Arabidopsis thaliana)
- 1001 Genomes (A Catalog of Arabidopsis thaliana Genetic Variation)
- DOE Joint Genome Institute (JGI) (Arabidopsis lyrata genome sequence assembly)
- Salk genomic expression database (Arabidopsis Transcriptome Genomic Express Database)
Databases
- RepBase (Repbase Update (RU) is a database of prototypic sequences representing repetitive DNA from different eukaryotic species)
- Plant Genome Database
- Munich Information Center for Protein Sequences (MIPS) (MIPS supports and maintains a set of generic databases as well as the systematic comparative analysis of microbial, fungal, and plant genomes)
- MazeGDB (Maize Genetics and Genomics Database)
- Maize Genome Browser
- Gramene (Gramene is a curated, open-source, data resource for comparative genome analysis in the grasses)
- miRBase (microRNA database)
- ASRP (Arabidopsis thaliana Small RNA Project)
- PubMed
- SRA (Short Read Archives)
Tools
- ATTED-II (Co-regulated gene relationship analysis for gene function estimation)
- VirtualPlant 1.0 (VirtualPlant integrates genomic data and provides visualization and analysis tools for rapid and efficient exploration of genomic data)
- The Bio-Array Resource for Plant Biology (Web-based tools for working with functional genomics and other data)
- DIURNAL (DIURNAL is a web tool that allows you to search and visualize diurnal and circadian gene expression profiles for your favorite Arabidopsis genes)
- zPicture (Alignment and visualization tool)
Microarray Links
