Kalladan, R., Lasky, J., Chang, T., Sharma, S., Juenger, T. and P. Verslues.  2017.  Natural variation identifies genes affecting drought-induced Abscisic Acid accumulation in Arabidopsis thaliana.

Campitelli, B, Des Marais, D., and T.E. Juenger.  2016.  Ecological interactions and the fitness effect of water-use efficiency: competition and drought alter the impact of natural MPK12 alleles in Arabidopsis. Ecology Letters 19 (4): 424-434.

Franz, P., Linc, G., Lee, C.-R., Aflitos, S.A., Lasky, J.R., Toomajian, D., Ali, H., Peters, J., van Dam, P., Ji, X., Kuzak, M., Gerats, T., Schibert, I., Schneeberger, K., Colot, V., Martienssen, R., Koornneef, M., Nordborg, M., Juenger, T.E., de Jong, H. and M.E. Schranz.  2016. Molecular, genetic and evolutionary analyses of a paracentric inversion in Arabidopsis thaliana.  Plant Journal 8: 159-178.

Des Marais DL, Skillern WD, Juenger TE. 2015. Deeply Diverged Alleles in the Arabidopsis AREB1 Transcription Factor Drive Genome-Wide Differences in Transcriptional Response to the Environment. Molecular Biology and Evolution 32(4):956-69.

Lovell, J., Mullen, J., Lowry, D., Awole, K., Richards, J., Sen, S., Verslues, P., Juenger, T. and Mckay, J. 2015. Exploiting Differential Gene Expression and Epistasis to Discover Candidate Genes for Drought-Associated QTLs in Arabidopsis thaliana. Plant Cell 27 (4): 969-983.

Des Marais, D., Auchincloss, L., Sukomtoh, E., McKay, J., Logan, T., Richards, J. and T. Juenger. 2014.  Variation in MAPK12 affects water-use efficiency in Arabidopsis and reveals a pleiotropic links between guard cell size and ABA response.

Lasky, J., Des Marais, D., Lowry, D., Polotskaya, I., McKay, J., Richards, J., Keitt, T. and T. Juenger. 2014. Natural variation in abiotic stress responsive gene expression and local adaptation to climate in Arabidopsis thaliana. Molecular Biology and Evolution 31 (9): 2283-2296.

Des Marais, D., Auchincloss, L., Sukomtoh, E., McKay, J., Logan, T., Richards, J. and T. Juenger. 2014. Variation in MAPK12 affects water-use efficiency in Arabidopsis and reveals a pleiotropic links between guard cell size and ABA response. Proceedings of the National Academy of Sciences 111: 2836-2841.


Verslues, P., Lasky, J., Juenger, T., Liu, T.-W., Kesari, R., Nagarag Kumar, M. 2014.Genome- wide association mapping combined with reverse genetics identifies new effectors of low water potential-induced proline accumulation in Arabidopsis thaliana. Plant Physiology 164: 144-159.


Kenny, A., McKay, J., Richards, J., and T. Juenger. 2014. Direct and indirect section on flowering time, water-use efficiency (deltaC13), and their plasticity to drought in Arabidopsis thaliana.  Ecology and Evolution 4 (23): 4505-4521.

Fletcher, R.S., Mullen, J.L., Yoder, S., Bauerle, W.L., Reuning, G., Sen, S., Meyer, E., Juenger, T. and J.K. McKay. 2014. Dissecting complex traits with a next-generation library of Arabidopsis thaliana near-isogenic lines. BMC Genomics 44: 5-29.

Lowry, D.L., Logan, T., Santuari, L., Hardtke, C., Richards, J., DeRose-Wilson, L., McKay, J., Sen, S. and T. Juenger. 2013.  Expression QTL mapping across water availability environments reveals contrasting associations with genomic features in Arabidopsis thaliana.  Plant Cell 25: 3266-3279.

Hsein, E., Nemali, K., Richards, J., Hanson, D., Juenger, T. and J. McKay.  2013. The genetic basis of physiological variation in water-use efficiency and carbon isotope composition in Arabidopsis thaliana.  Photosynthesis Research 10.1007/s11120-013-9891.

Bloomer, R., Juenger T., and V.V. Symonds.  2012.  Natural variation in GL1 and its effects on trichome density in Arabidosis thaliana.  Molecular Ecology 21:  3501-3515.

Lasky, J., McKay, J., Richards, J., Juenger, T., and T.H. Keitt. 2012. Characterizing genomic variation of Arabidopsis thaliana: the roles of geography and climate. Molecular Ecology:  DOI: 10.1111/j.1365-294X.2012.05709.x.

Lu, S, Zhao, H, Des Marais, D., Parsons, E., Wen, X., Xiaojing, X., Bangarusamy, D., Wang, G, Owland, O, Juenger, T. Bressan, R, and M. Jenks. 2012. Arabidopsis ECERIFERUM9 involvement in cuticle formation and maintenance of plant water status. Plant Physiology, doi:

Kesari, R., Lasky, J., Villamor, J.G., Des Marais, D., Chen, Y-J C., Liu, T.W., Lin, W., Juenger T., and P. Verslues. 2012. Intron mediated alternative splicing of Arabidopsis P5CS1 and its association with natural variation in proline and climate adaptation. Proceedings of the National Academy of Sciences, doi/10.1073/pnas.1203433109.

Des Marais, D., McKay, J., Richards, J., Sen, S., Wayne, T., and T.E. Juenger. 2012. Variation and conservation of gene expression and physiological responses to drought among Arabidopsis thaliana accessions. The Plant Cell 24: 893-914.

Des Marais, David L. and Thomas E. Juenger. In press. Pleiotropy, plasticity and the evolution of plant abiotic stress tolerance. The Year in Evolutionary Biology 2010.

Juenger, Thomas E., Saunak Sen, Elizabeth Bray, Eli Stahl, Tierney Wayne, John McKay and James H. Richards. In press. Exploring the genetic and expression differences between physiologically extreme ecotypes: Comparative genomic hybridization and gene expression studies of Kas-1 and Tsu-1 accessions of Arabidopsis thaliana. Plant Cell and Environment 33: 1268-1284.

McKay, J. K., J. H. Richards, K. S. Nemali, S. Sen, T. Mitchell-Olds, S. Boles, E. A. Stahl, T. Wayne, and T. E. Juenger. 2008. Genetics of drought adaptation in Arabidopsis thaliana II. QTL analysis of a new mapping population, Kas-1 x Tsu-1. Evolution 62:3014-3026.

Juenger, T. E., T. Wayne, S. Boles, V. V. Symonds, J. McKay, and S. J. Coughlan. 2006. Natural genetic variation in whole-genome expression in Arabidopsis thaliana: the impact of physiological QTL introgression. Mol Ecol 15:1351-1365.

Hausmann, N. J., T. E. Juenger, S. Sen, K. A. Stowe, T. E. Dawson, and E. L. Simms. 2005. Quantitative Trait Loci Affecting delta-13C and Response to Differential Water Availability in Arabidopsis thaliana. Evolution 59:81-96.

Juenger, T. E., J. McKay, N. Hausmann, J. Keurentjes, S. Sen, K. Stowe, T. Dawson, E. Simms, and J. Richards. 2005. Identification and Characterization of QTL Underlying Whole-Plant Physiology in Arabidopsis thaliana: delta C13, Stomatal Conductance and Transpiration Efficiency. Plant, Cell and Environment 28:697-708.